2020

(a) Developmental and Evolutionary Genomics

  1. Hozumi, A., Matsunobu, S., Mita, K., Treen, N., Sugihara, T., Horie, T., Sakuma, T., Yamamoto, T., Shiraishi, A., Hamada, M., Satoh, N., Sakurai, K., Satake, Honoo, Sasakura, Y.
    GABA-induced GnRH release triggers chordate metamorphosis
    Current Biology, 30:1555-1561 (2020)PUBMED
  2. Onuma, T.A., Hayashi, M., Gyoja, F., Kishi, K., Wang, K., Nishida, H.
    A chordate species lacking Nodal utilizes calcium oscillation and Bmp for left-right patterning.
    Proc Natl Acad Sci U S A., 117(8):4188-4198 (2020) PUBMED
  3. Ilsley, G.R., Suyama, R., Noda, T., Satoh, N., Luscombe, N.M.
    Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq
    Scientific Reports, 10:4961 (2020)PUBMED
  4. Simakov, O., Marlétaz, F., Yue, J.X., O'Connell, B., Jenkins, J., Brandt, A., Calef, R., Tung, C.H., Huang, T.K., Schmutz, J., Satoh, N., Yu, J.K., Putnam, N.H., Green, R.E., Rokhsar, D.S.
    Deeply conserved syntheny resolves early events in vertebrate evolution
    Nature Ecology & Evolution, 4(6): 820–830 (2020)PUBMED
  5. Yasuoka, Y.
    Morphogenetic mechanisms forming the notochord rod: The turgor pressure‐sheath strength model.
    Develop Growth Differ. 62(6):379-390. DOI: 10.1111/dgd.12665 PUBMED LINK 
  6. Li, K.L., Nakashima, K., Inoue, J., Satoh, N.
    Phylogenetic analyses of Glycosyl Hydrolase Family 6 genes in tunicates: Possible horizontal transfer
    Genes 11, 937, doi:10.3390/genes11080937 PUBMED
  7. Hamada, M., Satoh, N., Khalturin, K.
    A Reference Genome from the symbiotic hydrozoan, Hydra viridissima
    G3: Genes|Genomes|Genetics, 10(11):3883-3895. (2020) PUBMED
  8. Nesterenko, M.A., Starunov, V.V., Shchenkov, S.V., Maslova, A.R., Denisova, S.A., Granovich, A.I., Dobrovolskij, A.A., Khalturin, K.
    Molecular signatures of the rediae, cercariae and adult stages in the complex life cycles of parasitic flatworms (Digenea: Psilostomatidae)
    Parasites & Vectors volume 13, Article number: 559 (2020) PUBMED
  9. Zhao, R., Takeuchi, T., Koyanagi, R., Villar-Briones, A., Yamada, L., Sawada, H., Ishikawa, A., Iwanaga, S., Nagai, K., Che, Y., Satoh, N., Endo, K.
    Phylogenetic comparisons reveal mosaic histories of larval and adult shell matrix protein deployment in pteriomorph bivalves.
    Sci Rep 10, 22140 (2020). LINK 

(b) Environmental Genomics

  1. Shoguchi, E., Yoshioka, Y., Shinzato, C., Arimoto, A., Bhattacharya, D., Satoh, N.
    Correlation between organelle genetic variation and RNA editing in dinoflagellates associated with the coral Acropora digitifera
    Genome Biology and Evolution, 12:203-209 (2020)LINK PUBMED
  2. Inoue, J., Hisata, K., Yasuda, N., Satoh, N.
    An investigation into the genetic history of Japanese populations of three starfish, Acanthaster planci, Linckia laevigata, and Asterias amurensis, based on complete mitochondrial DNA sequences
    G3: Genes|Genomes|Genetics, 10: 2519-2528 (2020)PUBMED
  3. Takagi, T., Yoshioka, Y., Zayasu, Y., Satoh, N., Shinzato, C.
    Transcriptome analyses of immune system behaviors in primary polyp of coral Acropora digitifera exposed to the bacterial pathogen Vibrio coralliilyticus under thermal loading
    Marine Biotechnology, 22:748-759. (2020)PUBMED LINK 
  4. Selmoni, O., Lecellier, G., Ainley, L., Collin, A., Doucet, R., Dubousquet, V., Feremaito, H., Waia, E.I., Kininmonth, S.J., Magalon, H., Malimali, S., Maugateau, A., Meibom, A., Mosese, S., Rene-Trouillefou, M., Satoh, N., van Oppen, M.J.H., Xozame, A., Yekawene, M., Joost, S., Berteaux-Lecellier, V.
    Using modern conservation tools for innovative management of coral reefs: the MANACO Consortium Journal: Frontiers in Marine Science, section Marine Conservation and Sustainability
    Frontiers in Marine Science, 7:609 LINK 
  5. Shoguchi, E., Beedessee, G., Hisata, K., Tada, I., Narisoko, H., Satoh, N., Kawachi, M., Shinzato, C.
    A New Dinoflagellate Genome Illuminates a Conserved Gene Cluster Involved in Sunscreen Biosynthesis
    Genome Biology and Evolution, 13:evaa235. PUBMED
  6. Yoshioka, Y., Yamashita, H., Suzuku, G., Zayasu, Y., Tada I., Kanda, M., Satoh, N., Shoguchi, E., Shinzato, C.
    Whole-genome transcriptome analyses of native symbionts reveal host coral genomic novelties for establishing coral-algae symbioses.
    Genome Biology and Evolution, 13:evaa240. PUBMED

(c) Functional Genomics

  1. Takeuchi, T., Masaoka, T., Aoki, H., Koyanagi, R., Fujie, M., Satoh, N.
    Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs
    Evolutionary Applications, 13: 838–854 (2020)LINK PUBMED
  2. Choi, J.W., Graf, L., Peters, A.F., Cock, J.M., Nishitsuji, K., Arimoto, A., Shoguchi, E., Nagasato, C., Choi, C.G., Yoon, H.S.
    Organelle inheritance and genome architecture variation in isogamous brown algae.
    Sci Rep. 10:2048. doi: 10.1038/s41598-020-58817-7 PUBMED
  3. Ishikawa, A., Shimizu, K., Isowa, Y., Takeuchi, T., Zhao, R., Kito, K., Fujie, M., Satoh, N., Endo, K.
    Functional shell matrix proteins tentatively identified by asymmetric snail shell morphology.
    Scientific Reports, 10:9768.PUBMED LINK 
  4. Nishitsuji, K., Arimoto, A., Yonashiro, Y., Hisata, K., Fujie, M., Kawamitsu, M., Shoguchi, E., Satoh, N.
    Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus
    BMC Genomics, 21: 422 (2020)PUBMED LINK 
  5. Hashimoto, T., Kozone, I., Hashimoto, J., Suenaga, H., Fujie, M., Satoh, N., Ikeda, H., Shin-Ya, K.
    Identification, Cloning and Heterologous Expression of Biosynthetic Gene Cluster for Desertomycin
    J Antibiot , 73(9):650-654 (2020). PUBMED
  6. Beedessee, G., Kubota, T., Arimoto, A., Nishitsuji, K., Waller, R.F., Hisata, K., Yamasaki, S., Satoh, N., Kobayashi, J., Shoguchi, E.
    Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate
    BMC Biology, 18, Article number: 139 (2020)LINK PUBMED
  7. Nogawa, T., Terai, A., Amagai, K., Hashimoto, J., Futamura, Y., Okano, A., Fujie, M., Satoh, N., Ikeda, H., Shin-Ya, K., Osada, H., Takahashi, S.
    Heterologous Expression of the Biosynthetic Gene Cluster for Verticilactam and Identification of Analogues.
    J Nat Prod. doi: 10.1021/acs.jnatprod.0c00755. PUBMED

(d) Other Fields

  1. Gelineau, Y., Saget, M., Brault, V., Anamparéla, B., Aboulker, C., Martinet, J., Maeda, K., Feutry P.
    Biology of jungle perch, Kuhlia rupestris, identification of threats and knowledge gaps to improve local and global management
    Cybium 44: 45–55 (2020)LINK