Publications 2010

  1. Chapman JA, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T, Rattei T, Balasubramanian PG, Borman J, Busam D, Disbennett K, Pfannkoch C, Sumin N, Sutton GG, Viswanathan LD, Walenz B, Goodstein DM, Hellsten U, Kawashima T, Prochnik SE, Putnam NH, Shu S, Blumberg B, Dana CE, Gee L, Kibler DF, Law L, Lindgens D, Martinez DE, Peng J, Wigge PA, Bertulat B, Guder C, Nakamura Y, Ozbek S, Watanabe H, Khalturin K, Hemmrich G, Franke A, Augustin R, Fraune S, Hayakawa E, Hayakawa S, Hirose M, Hwang JS, Ikeo K, Nishimiya-Fujisawa C, Ogura A, Takahashi T, Steinmetz PR, Zhang X, Aufschnaiter R, Eder MK, Gorny AK, Salvenmoser W, Heimberg AM, Wheeler BM, Peterson KJ, Böttger A, Tischler P, Wolf A, Gojobori T, Remington KA, Strausberg RL, Venter JC, Technau U, Hobmayer B, Bosch TC, Holstein TW, Fujisawa T, Bode HR, David CN, Rokhsar DS, Steele RE.
    The dynamic genome of Hydra.
    Nature, 464: 592-596 (2010).PUBMED
  2. Hellsten U, Harland RM, Gilchrist MJ, Hendrix D, Jurka J, Kapitonov V, Ovcharenko I, Putnam NH, Shu S, Taher L, Blitz IL, Blumberg B, Dichmann DS, Dubchak I, Amaya E, Detter JC, Fletcher R, Gerhard DS, Goodstein D, Graves T, Grigoriev IV, Grimwood J, Kawashima T, Lindquist E, Lucas SM, Mead PE, Mitros T, Ogino H, Ohta Y, Poliakov AV, Pollet N, Robert J, Salamov A, Sater AK, Schmutz J, Terry A, Vize PD, Warren WC, Wells D, Wills A, Wilson RK, Zimmerman LB, Zorn AM, Grainger R, Grammer T, Khokha MK, Richardson PM, Rokhsar DS.
    The genome of the Western clawed frog Xenopus tropicalis.
    Science, 328: 633-636 (2010).PUBMED
  3. Tassy O, Dauga D, Daian F, Sobral D, Robin F, Khoueiry P, Salgado D, Fox V, Caillol D, Schiappa R, Laporte B, Rios A, Luxardi G, Kusakabe T, Joly JS, Darras S, Christiaen L, Contensin M, Auger H, Lamy C, Hudson C, Rothbächer U, Gilchrist MJ, Makabe KW, Hotta K, Fujiwara S, Satoh N, Satou Y, Lemaire P.
    The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.
    Genome Res., 20: 1459-1468 (2010).PUBMED
  4. Kubo A, Suzuki N, Yuan X, Nakai K, Satoh N, Imai KS, Satou Y.
    Genomic cis-regulatory networks in the early Ciona intestinalis embryo.
    Development, 137: 1613-1623 (2010).PUBMED
  5. Ikuta T, Satoh N, Saiga H.
    Limited functions of Hox genes in the larval development of the ascidian Ciona intestinalis.
    Development, 137: 1505-1513 (2010). PUBMED
  6. Maeda K., Tachihara K.
    Diel and seasonal occurrence patterns of drifting fish larvae in the Teima Stream, Okinawa Island.
    Pacific Science, 64: 161-176 (2010).
  7. Hozumi A, Kawai N, Yoshida R, Ogura Y, Ohta N, Satake H, Satoh N, Sasakura Y.
    Efficient transposition of a single Minos transposon copy in the genome of the ascidian Ciona intestinalis with a transgenic line expressing transposase in eggs.
    Dev Dyn., 239(4):1076-88 (2010).PUBMED
  8. Sasakura Y, Suzuki M, Hozumi A, Inaba K, Satoh N.
    Maternal factor-mediated epigenetic gene silencing in the ascidian Ciona intestinalis.
    Mol Genet Genomics., 283(1):99-110 (2010).PUBMED
  9. Fujikawa T, Munakata T, Kondo S, Satoh N, Wada S.
    Stress response in the ascidian Ciona intestinalis: transcriptional profiling of genes for the heat shock protein 70 chaperone system under heat stress and endoplasmic reticulum stress.
    Cell Stress Chaperones. 15(2):193-204 (2010).PUBMED
  10. Minamoto T, Hanai S, Kadota K, Oishi K, Matsumae H, Fujie M, Azumi K, Satoh N, Satake M, Ishida N.
    Circadian clock in Ciona intestinalis revealed by microarray analysis and oxygen consumption.
    J Biochem. 147(2):175-84 (2010).PUBMED
  11. Ohta, N., Horie, T., Satoh, N.,Sasakura, Y.
    Transposone-mediated enhancer detection reveals the location, morphology and development of the Cupular Organs, which are putative hydrodynamic sensors, in the ascidian Ciona intestinalis.
    Zool. Sci. 27:842-850 (2010).PUBMED
  12. Shimozono N, Ohta N, Satoh N, Hamada M.
    Differential Regional Expression of Genes in the Developing Brain of Ciona intestinalis Embryos.
    Zoolog Sci., 27(2):103-9 (2010).PUBMED
  13. Takahashi H, Hotta K, Takagi C, Ueno N, Satoh N, Shoguchi E.
    Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos.
    Zoolog Sci., 27(2):110-8 (2010).PUBMED
  14. Yeats B, Matsumoto J, Mortimer SI, Shoguchi E, Satoh N, Hastings KE.
    SL RNA genes of the ascidian tunicates Ciona intestinalis and Ciona savignyi.
    Zoolog Sci., 27(2):171-80 (2010).PUBMED