Publications 2016

(a) Developmental and Evolutionary Genomics

  1. Satoh, N.
    Chordate Origins and Evolution
    Elsevier/Academic Press, 206 pages (2016) LINK
    mgu Publications 2016 1 Chordate Origins and Evolution
  2. Yasuoka, Y., Shinzato, C., Satoh, N.
    The mesoderm-forming gene brachyury regulates ectoderm-endoderm demarcation in the coral Acropora digitifera
    Current Biology pii: S0960-9822(16)30923-X. doi: 10.1016/j.cub.2016.08.011. (2016)LINK PUBMED
  3. Satoh, N.
    Two decades of ascidian developmental biology: A personal research story.
    Curr. Topics Dev. Biol. 117:289-300 (2016)LINK PUBMED
  4. Satoh, N.
    "Evolutionary Origin of Notochord" in "Chordomas.
    Ed, Pamir, M.N. Thieme Publishers. New York. (2016)
  5. Takeuchi, T., Yamada, L., Shinzato, C., Sawada, H., Satoh, N.
    Stepwise evolution of coral biomineralization revealed with genome-wide proteomics and transcriptomics
    PLOS ONE 11(6): e0156424. DOI:10.1371/journal.pone.0156424 (2016)LINK PUBMED
  6. Marin F, Bundeleva I, Takeuchi T, Immel F, Medakovic D
    Organic matrices in metazoan calcium carbonate skeletons: Composition, functions, evolution
    Journal of Structural Biology doi:10.1016/j.jsb.2016.04.006 (2016)LINK PUBMED
  7. Kodama H, Miyata Y, Kuwajima M, Izuchi R, Kobayashi A, Gyoja F, Onuma TA, Kumano G, Nishida H.
    Redundant mechanisms are involved in suppression of default cell fates during embryonic mesenchyme and notochord induction in ascidians.
    Developmental Biology 416: 162-172. doi: 10.1016/j.ydbio.2016.05.033.(2016)LINK PUBMED
  8. Suzuki, M., Mori, T., Satoh, N.
    The Ciona intestinalis cleavage clock is independent of DNA methylation.
    Genomics pii: S0888-7543(16)30091-X. doi: 10.1016/j.ygeno.2016.10.001. (2016)PUBMED
  9. Session, A.M., Uno, Y., Kwon, T., Chapman, J.A., Toyoda, A., Takahashi, S., Fukui, A., Hikosaka, A., Suzuki, A., Kondo, M., van Heeringen, S.J., Quigley, I., Heinz, S., Ogino, H., Ochi, H., Hellsten, U., Lyons, J.B., Simakov, O., Putnam, N., Stites, J., Kuroki, Y., Tanaka, T., Michiue, T., Watanabe, M., Bogdanovic, O., Lister, R., Georgiou, G., Paranjpe, S.S., van Kruijsbergen, I., Shu, S., Carlson, J., Kinoshita, T., Ohta, Y., Mawaribuchi, S., Jenkins, J., Grimwood, J., Schmutz, J., Mitros, T., Mozaffari, S.V., Suzuki, Y., Haramoto, Y., Yamamoto, T.S., Takagi, C., Heald, R., Miller, K., Haudenschild, C., Kitzman, J., Nakayama, T., Izutsu, Y., Robert, J., Fortriede, J., Burns, K., Lotay, V., Karimi, K., Yasuoka, Y., Dichmann, D.S., Flajnik, M.F., Houston, D.W., Shendure, J., DuPasquier, L., Vize, P.D., Zorn, A.M., Ito, M., Marcotte, E.M., Wallingford, J.B., Ito, Y., Asashima,M., Ueno, N., Matsuda, Y., Veenstra, G.J.C., Fujiyama, A., Harland, R.M., Taira, M., Rokhsar, D.S.
    Genome evolution in the allotetraploid frog Xenopus laevis
    Nature 538, 336–343.LINK PUBMED
  10. Watanabe, M., Yasuoka, Y., Mawaribuchi, S., Kuretani, A., Ito, M., Kondo, M., Ochi, H., Ogino, H., Fukui, A., Taira, M., Kinoshita, T.
    Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis.
    Dev Biol. pii: S0012-1606(16)30053-7. doi: 10.1016/j.ydbio.2016.09.017.PUBMED

(b) Environmental Genomics

  1. Zayasu, Y., Shinzato, C.
    Hope for coral reef rehabilitation: massive synchronous spawning by outplanted corals in Okinawa, Japan.
    Coral Reefs, 35(4), 1295. DOI 10.1007/s00338-016-1463-7 (2016) LINK 
  2. Zayasu, Y., Nakajima, Y., Sakai, K., Suzuki, G., Satoh, N., Shinzato, C.
    Unexpectedly complex gradation of coral population structure in the Nansei Islands, Japan.
    Ecology and Evolution. on line. 10.1002/ece3.2296 (2016).LINK PUBMED
  3. Hosokawa, T., Ishii, Y., Nikoh, N., Fujie, M., Satoh, N., Fukatsu, T.
    Obligate bacterial mutualists evolving from environmental bacteria in natural insect populations.
    Nature Microbiology, 1:15011 (2016)LINK PUBMED
  4. Detree, C., Chabenat, A., Lallier, F.H., Satoh, N., Shoguchi, E., Tanguy, A., Mary, J.
    Multiple I-Type Lysozymes in the Hydrothermal Vent Mussel Bathymodiolus azoricus and Their Role in Symbiotic Plasticity.
    PLoS One 11(2):e0148988. doi: 10.1371/journal.pone.0148988. (2016) PUBMED
  5. Nakajima, Y., Zayasu, Y., Shinzato, C., Satoh, N., Mitarai. S.
    Genetic differentiation and connectivity of morphological types of the broadcast-spawning coral Galaxea fascicularis in the Nansei Islands, Japan
    Ecology and Evolution, 6:1457-1469 (2016)LINK PUBMED
  6. Mohamed AR, Cumbo V, Harii S, Shinzato C, Chan CX, Ragan MA, Bourne DG, Willis BL, Ball EE, Satoh N, Miller DJ.
    The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome.
    Mol Ecol. doi: 10.1111/mec.13659. (2016)LINK PUBMED
  7. Nakajima Y, Shinzato C, Khalturina M, Nakamura M, Watanabe H, Satoh N, Mitarai S.
    The mitochondrial genome sequence of a deep-sea, hydrothermal vent limpet, Lepetodrilus nux, presents a novel vetigastropod gene arrangement.
    Mar Genomics. pii: S1874-7787(16)30030-7. doi: 10.1016/j.margen.2016.04.005. (2016)LINK PUBMED
  8. Bhattacharya, D., Agrawal, S., Aranda, M., Baumgarten, S., Belcaid, M., Drake, J.L., Erwin, D., Foret, S., Gates, R.D., Gruber, D.F., Kamel, B., Lesser, M.P., Levy, O., Liew, Y.J., MacManes, M., Mass, T., Medina, M., Mehr, S., Meyer, E., Price, D.C., Putnam, H.M., Qiu, H., Shinzato, C., Shoguchi, E., Stokes, A.J., Tambutté, S., Tchernov, D., Voolstra, C.R., Wagner, N., Walker, C.W., Weber, A.P.M., Weis, V., Zelzion, E., Zoccola, D., Falkowski, P.G.
    Comparative genomics explains the evolutionary success of reef-forming corals.
    eLife 2016;5:e13288, DOI: http://dx.doi.org/10.7554/eLife.13288 (2016)LINK PUBMED
  9. Arrigoni, R., Benzoni, F., Huang, D., Fukami, H., Chen, C.A., Berumen, M.L., Hoogenboom, M., Thomson, D.P., Hoeksema, B.W., Budd, A.F., Zayasu, Y., Terraneo, T. I., Kitano, Y.F., Baird, A.H.
    When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus.
    Contributions to Zoology, 85 (4): 387-422. (2016) LINK 
  10. Omori, M., Higa, Y., Shinzato, C., Zayasu, Y., Nagata, T., Nakamura, R., Yokokura, A., Janadou, S.
    Development of active restoration methodologies for coral reefs using asexual reproduction in Okinawa, Japan.
    Proceeding of the 13th International Coral Reef Symposium: 369–387 (2016)

(c) Functional Genomics

  1. Nishitsuji, K., Arimoto, A., Iwai, K., Sudo, Y., Hisata, K., Fujie, M., Arakaki, N., Kushiro, T., Konishi, T., Shinzato, C., Satoh, N., Shoguchi, E.
    A draft genome of the brown alga, Cladosiphon okamuranus, S-strain: a platform for future studies of 'mozuku' biology.
    DNA research pii: dsw039 (2016)LINK PUBMED
  2. Takeuchi, T., Koyanagi, R., Gyoja, F., Kanda, M., Hisata, K., Fujie, M., Goto, H., Yamasaki, S., Nagai, K., Morino, Y., Miyamoto, H., Endo, K., Endo, H., Nagasawa, H., Kinoshita., S., Asakawa, S., Watabe, S., Satoh, N., Kawashima, T.
    Bivalve-specific gene expansion in the pearl oyster genome: Implications of adaptation to a sessile lifestyle
    Zoological Letters, 2:3 (2016)LINK PUBMED

(d) Other Fields

  1. Katsuyama Y, Sone K, Satou R, Izumikawa M, Takagi M, Fujie M, Satoh N, Shin-Ya K, Ohnishi Y.
    Involvement of the Baeyer-Villiger Monooxygenase IfnQ in the Biosynthesis of Isofuranonaphthoquinone Scaffold of JBIR-76 and -77.
    Chembiochem. 2;17(11):1021-8. doi: 10.1002/cbic.201600095. (2016) PUBMED
  2. Du D, Katsuyama Y, Onaka H, Fujie M, Satoh N, Shin-Ya K, Ohnishi Y.
    Production of a Novel Amide-Containing Polyene by Activating a Cryptic Biosynthetic Gene Cluster in Streptomyces sp. MSC090213JE08.
    Chembiochem. 3;17(15):1464-71. doi: 10.1002/cbic.201600167. (2016) PUBMED
  3. Iida, M., Kondo, M., Tabouret, H., Maeda, K., Pécheyran, C., Hagiwara, A., Keith, P., Tachihara, K.
    Specific gravity and migratory patterns of amphidromous gobioid fish from Okinawa Island, Japan Journal of Experimental Marine Biology and Ecology, 486: 160–169. (2016) LINK
  4. 前田健（KenMaeda）
    両側回遊とは？バリエーションから考える（What is amphidromy? A discussion of various migration patterns）
    海洋と生物（Aquabiology）38 (4): 350-355 (2016) LINK