2021

Environmental Genomics

  1. Shinzato, C., Takeuchi, T., Yoshioka, Y., Tada, I., Kanda, M., Broussard, C., Iguchi, A., Kusakabe, M., Marin, F., Satoh, N., Inoue, M.
    Whole-genome sequencing highlights conservative genomic strategies of a stress-tolerant, long-lived scleractinian coral, Porites australiensis Vaughan, 1918.
    GBE, 1;13(12):evab270. doi: 10.1093/gbe/evab270.  PUBMED
  2. Kawamura, K., Sekida, S., Nishitsuji, K., Shoguchi, E., Hisata, K., Fujiwara, S., Satoh, N.
    In vitro symbiosis of reef-building coral cells with photosynthetic dinoflagellates
    frontiers in Marine Science, doi:10.3389/fmars.2021.706308 (2021) LINK
  3. Shinzato, C., Khalturin, K., Inoue, J., Zayasu, Y., Kanda, M., Kawamitsu, M., Yoshioka, Y., Yamashita, H., Suzuki, G., Satoh, N.
    Eighteen coral genomes reveal the evolutionary origin of Acropora strategies to accommodate environmental changes
    Molecular Biology and Evolution, 38: 16-30. (2021)  LINK PUBMED
  4. Satoh, N., Kinjo, K., Kohei Shintaku, K., Kezuka, D., Ishimori, H., Yokokura, A., Hagiwara, K., Hisata, K., Kawamitsu, M., Koizumi, K., Shinzato, C., Zayasu, Y.
    Color morphs of the coral, Acropora tenuis, show different responses to environmental stress and different expression profiles of fluorescent-protein genes
    G3: Genes|Genomes|Genetics, 11(2), jkab018 (2021)  LINK PUBMED
  5. Shinzato, C., Narisoko, H., Nishitsuji, N., Nagata, T., Satoh, N., Inoue, J.
    Novel mitochondrial DNA markers for Scleractinian corals and generic-level environmental DNA metabarcoding.
    Front. Mar. Sci. 8:758207. (2021) doi: 10.3389/fmars.2021.758207 LINK 
  6. Kawamura, K., Nishitsuji, K., Shoguchi, E., Fujiwara, S., Satoh, N.
    Establishing sustainable cell lines of a coral, Acropora tenuis
    Marine Biotechnology, doi: 10.1007/s10126-021-10031-w PUBMED
  7. Mason, B., Cooke, I., Moya, A., Augustin, R., Lin, M., Satoh, N., Bosch, T., Bourne, D., Hayward, D., Andrade, N., Forêt, S., Ying, H., Ball, E., Miller, D.J.
    AmAMP1 from Acropora millepora and damicornin define a family of coral-specific antimicrobial peptides related to the Shk toxins of sea anemones
    Developmental and Comparative Immunology, 114: 103866. (2021) PUBMED
  8. Zayasu, Y., Takeuchi, T., Nagata, T., Kanai, M., Fujie, M., Kawamitsu, M. Chinen, W. Shinzato, C., Satoh, N.
    Genome-wide SNP genotyping reveals hidden population structure of an acroporid species at a subtropical coral island: Implications for coral restoration.
    Aquatic Conservation: Marine and Freshwater Ecosystems, 1–11. (2021) LINK 
  9. Sassa, M., Takagi, T., Kinjo, A., Yoshioka, Y., Zayasu, Y., Shinzato, C., Kanda, S., Murakami-Sugihara, N., Shirai, K., Inoue, K.
    Divalent metal transporter-related protein restricts animals to marine habitats
    Communication Biology 4, 463 (2021)  LINK PUBMED

Developmental and Evolutionary Genomics

  1. Satoh, N., Tominaga, H., Kiyomoto, M., Hisata, K., Inoue, J., Nishitsuji, K.
    A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum
    Front. Cell Dev. Biol., doi:10.3389/fcell.2021.696875 LINK 
  2. Kashimoto, R., Hisata, K., Shinzato, C., Satoh, N., Shoguchi, E.
    Expansion and diversification of fluorescent protein genes in fifteen Acropora species during evolution of acroporid corals
    Genes, 12:397 PUBMED
  3. Satou, Y., Sato, A., Yasuo, H., Mihirogi, Y., Bishop, J., Fujie, M., Kawamitsu, M., Hisata, K., Satoh, N.
    Chromosomal inversion polymorphisms in two sympatric ascidian lineages
    Genome Bioogy and Evolution, evab068 PUBMED

Functional Genomics

  1. Takeuchi, T., Fujie, M., Koyanagi, R., Plasseraud, L., Ziegler-Devin, I., Brosse, N., Broussard, C., Satoh, N., Marin, F.
    The ‘Shellome’ of the Crocus Clam Tridacna crocea Emphasizes Essential Components of Mollusk Shell Biomineralization
    Front. Genet., doi:10.3389/fgene.2021.674539 (2021) LINK 
  2. Maeda, T., Takahashi, S., Yoshida, T., Shimamura, S., Takaki, Y., Nagai, Y., Toyoda, A., Suzuki, Y., Arimoto, A., Ishii, H., Satoh, N., Nishiyama, T., Hasebe, M., Maruyama, T., Minagawa, J., Obokata, J., Shigenobu, S.
    Chloroplast acquisition without the gene transfer in kleptoplastic sea slugs, Plakobranchus ocellatus
    eLife, 10:e60176. doi: 10.7554/eLife.60176.PUBMED
  3. Patwary, Z.P., Paul, N.A., Nishitsuji, K., Campbell, A.H., Shoguchi, E., Zhao, M., Cummins, S.F.
    Application of omics research in seaweeds with a focus on red seaweeds
    Brief Funct Genomics, elab023. doi: 10.1093/bfgp/elab023. PUBMED 
  4. Okubo, S., Ena, E., Okuda, A., Kozone, I., Hashimoto, J., Nishitsuji, Y., Fujie, M., Satoh, N., Ikeda, H., Shin-Ya, K.
    Identification of functional cytochrome P450 and ferredoxin from Streptomyces sp. EAS-AB2608 by transcriptional analysis and their heterologous expression.
    Appl Microbiol Biotechnol, 105(10):4177-4187. doi: 10.1007/s00253-021-11304-z. PUBMED
  5. Yoneda, Y., Yamamoto, K., Makino, A., Tanaka, Y., Meng, X.Y., Hashimoto, J., Shin-ya, K., Satoh, N., Fujie, M., Toyama, T., Mori, K., Ike, M., Morikawa, M., Kamagata, Y., Tamaki, H.
    Novel Plant-Associated Acidobacteria Promotes Growth of Common Floating Aquatic Plants, Duckweeds.
    Microorganisms. 9(6):1133. https://doi.org/10.3390/microorganisms9061133  LINK PUBMED
  6. Kawato, S., Nishitsuji, K., Arimoto, A., Hisata, K., Kawamitsu, M., Nozaki, R., Kondo, H., Shinzato, C., Ohira, T., Satoh, N., Shoguchi, E., Hirono, I.
    Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus
    G3, 5;11(11):jkab268 (2021)   PUBMED
  7. Shoguchi, E.
    Gene clusters for biosynthesis of mycosporine-like amino acids in dinoflagellate nuclear genomes: Possible recent horizontal gene transfer between species of Symbiodiniaceae (Dinophyceae)
    Journal of Phycology.  LINK PUBMED
  8. Maeda, K., Shinzato, C., Koyanagi, R., Kunishima, T., Kobayashi, H., Satoh, N., Palla, H.P.
    Two new species of Rhinogobius (Gobiiformes: Oxudercidae) from Palawan, Philippines, with their phylogenetic placement
    Zootaxa, 5068(1), 81–98. LINK

Sequencing collaboration