Publications 2011

[2011]

  1. Shinzato, C., Shoguchi, E., Kawashima, T., Hamada, M., Hisata, K., Tanaka, M., Fujie, M., Fujiwara, M., Koyanagi, R., Ikuta, T., Fujiyama, A., Miller, D. J., and Satoh, N.
    Using the Acropora digitifera genome to understand coral responses to environmental change.
    Nature, 476(7360):320-323. (2011) PUBMED 
  2. Horie, T., Shinki, R., Ogura, Y., Kusakabe, T. G., Satoh, N., and Sasakura, Y.
    Ependymal cells of chordate larvae are stem-like cells that form the adult nervous system.
    Nature 469 (7331):525-528. (2011) PUBMED
  3. Ogura, Y., Sakaue-Sawano, A., Nakagawa, M., Satoh, N., Miyawaki, A., and Sasakura, Y. 2011.
    Coordination of mitosis and morphogenesis: role of a prolonged G2 phase during chordate neurulation.
    Development, 138(3):577-587. (2011) PUBMED
  4. Yamada, S., Ueno, N., Satoh, N., and Takahashi, H.
    Ciona intestinalis Noto4 contains a phosphotyrosine interaction domain and is involved in the midline interaction of notochord cells.
    Intern. J. Dev. Biol., 55(1):11-18. (2011) PUBMED
  5. Hamada, M., Shimozono, N., Ohta, N., Satou, Y., Horie, T., Kawada, T., Satake, H., Sasakura, Y., and Satoh, N.
    Expression of Neuropeptide- and Hormone-Encoding Genes in the Ciona intestinalis Larval Brain
    Dev. Biol., 352(2):202-214. (2011) PUBMED
  6. Shoguchi, E., Fujie, M., and Hamada, M.
    No chromosomal clustering of housekeeping genes in the marine chordate Ciona intestinalis
    Marine Genomics, 4 (3):151-157. (2011) PUBMED
  7. Shoguchi, E., Hamada, M., Fujie, M., and Satoh, N.
    Direct examination of chromosomal clustering of organ-specific genes in the chordate Ciona intestinalis
    Genesis, 49(8):662-72. (2011) PUBMED
  8. Nakashima, K., Nishino, A., Horikawa, Y., Hirose, E., Sugiyama, J., and Satoh, N.
    The crystalline phase of cellulose changes under developmental control in a marine choradte.
    Cellular and Molecular Life Science, 68(9):1623-1631. (2011) PUBMED
  9. Satoh, N.
    Tunicate embryos and cell specification (version 2.0)
    Encyclopedia of Life Sciences (2011) LINK
  10. Maeda, K., Mukai, T., and Tachihara, K.
    Newly collected specimens of the sleeper Eleotris acanthopoma (Teleostei: Eleotridae) from French Polynesia indicate a wide and panmictic distribution in the West and South Pacific
    Pacific Science 65: 257–264 (2011) LINK
  11. Nakashima, K., Nishino, A., Hirose, E.
    Forming a tough shell via an intracellular matrix and cellular junctions in the tail epidermis of Oikopleura dioica (Chordata: Tunicata: Appendicularia).
    Naturwissenschaften98(8): 661-669. (2011) PUBMED
    mgu Publications 2011.11 Naturwissenschaften98
  12. Yoshida, M. A., Ishikura, Y., Moritaki, T., Shoguchi, E., Shimizu, K. K., Sese, J., Ogura, A.
    Genome structure analysis of molluscs revealed whole genome duplication and lineage specific repeat variation.
    Gene 483 (1-2):63-71. (2011) PUBMED
  13. Iguchi, A., Shinzato, C., Foret, S., and Miller, D. J.
    Identification of Fast-Evolving Genes in the Scleractinian Coral Acropora Using Comparative EST Analysis.
    PLoS One 6 (6):e20140. (2011) PUBMED
  14. Ikuta, T.
    Evolution of Invertebrate Deuterostomes and Hox/ParaHox Genes.
    Genomics, Proteomics & Bioinformatics vol.9 issue3 p.77-76. (2011) PUBMED
  15. Katayama, T., Wilkinson, M. D., Vos, R., Kawashima, T., Kawashima, S., Nakao, M., Yamamoto, Y., Chun, H. W., Yamaguchi, A., Kawano, S., Aerts, J., Aoki-Kinoshita, K. F., Arakawa, K., Aranda, B., Bonnal, R. J., Fernandez, J. M., Fujisawa, T., Gordon, P. M., Goto, N., Haider, S., Harris, T., Hatakeyama, T., Ho, I., Itoh, M., Kasprzyk, A., Kido, N., Kim, Y. J., Kinjo, A. R., Konishi, F., Kovarskaya, Y., von Kuster, G., Labarga, A., Limviphuvadh, V., McCarthy, L., Nakamura, Y., Nam, Y., Nishida, K., Nishimura, K., Nishizawa, T., Ogishima, S., Oinn, T., Okamoto, S., Okuda, S., Ono, K., Oshita, K., Park, K. J., Putnam, N., Senger, M., Severin, J., Shigemoto, Y., Sugawara, H., Taylor, J., Trelles, O., Yamasaki, C., Yamashita, R., Satoh, N., and Takagi, T.
    The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.
    J Biomed Semantics 2 (1):4. (2011) PUBMED
  16. Shinzato, C. and Satoh, N.
    A review for the coral genome paper, "Using the Acropora digitifera genome to understand coral responses to environmental change."
    First Author's, online publication (2011) LINK
  17. Onimaru, K., Shoguchi, E., Kuratani, S., and Tanaka, M. 2011.
    Development and evolution of the lateral plate mesoderm: Comparative analysis of amphioxus and lamprey with implications for the acquisition of paired fins.
    Developmental Biology, 359(1):124-136. (2011) PUBMED
  18. Hirose, E., Nakashima, K., and Nishino, A.
    Is there intracellular cellulose in the appendicularian tail epidermis? A tale of the adult tail of an invertebrate chordate.
    Communicative & Integrative Biology 4 (6). (2011) LINK
  19. Noda, T.
    The maternal genes Ci-p53/p73-a and Ci-p53/p73-b regulate zygotic ZicL expression and notochord differentiation in Ciona intestinalis embryos.
    Developmental Biology, 360(1):216-229. (2011)PUBMED
  20. 前田健・山崎望・向井貴彦・立原一憲.
    沖縄島におけるミツボシゴマハゼとマングローブゴマハゼの形態と生息環境.
    魚類学雑誌 Japanese Journal of Ichthyology 58:127-140. (2011)
  21. Maeda, K., Saeki, T., and Tachihara, K.
    New record of a freshwater terapontid fish, Mesopristes cancellatus (Teleostei: Terapontidae) from Okinawa Island in the Ryukyu Archipelago.
    Biogeography 13:45-50. (2011)
  22. Miller, D. J., Ball, E. E., Foret, S., and Satoh, N.
    Coral genomics and transcriptomics – Ushering in a new era in coral biology.
    Journal of Experimental Marine Biology and Ecology 408:114-119. (2011)