2024

Developmental and Evolutionary

  1. Takahashi, H., Hisata, K., Iguchi, R., Kikuchi, S., Ogasawara, M., Satoh, N.
    scRNA-seq analysis of cells comprising the amphioxus notochord
    Developmental Biology 508:24–37 (2024)  PUBMED
  2. Makabe, K.W., Jensen, H.I., Fodor, A.C.A., Hsu, J., Jeffery, W.R., Satoh, N., and Swalla, B.J.
    Cymric, a Maternal and Zygotic HTK-16-Like SHARK Family Tyrosine Kinase Gene, Is Disrupted in Molgula occulta, a Tailless Ascidian
    The Biological Bulletin, 245:1-8 (2024) PUBMED

 

Enviromental Genomics

  1. Nishitsuji, K., Nagahama, S., Narisoko, H., Shimada, K., Okada, N., Shimizu, Y., Satoh, N.
    Possible monitoring of mesophotic scleractinian corals using an underwater mini-ROV to sample coral eDNA
    R. Soc. Open Sci. 11: 221586. PUBMED
  2. Açıkbaş, A.H.O., Narisoko, H., Huerlimann, R., Nishitsuji, K., Satoh, N., Reimer, J.D., Ravasi, T.
    Fish and coral assemblages of a highly isolated oceanic island: The first eDNA survey of the Ogasawara Islands
    Environmental DNA. 2024;6:e509 https://doi.org/10.1002/edn3.509
  3. Shikina, S., Yoshioka, Y., Chiu, Y.L., Uchida, T., Chen, E., Cheng, Y.C., Lin, T.C., Chu, Y.L., Kanda, M., Kawamitsu, M., Fujie, M., Takeuchi, T., Zayasu, Y., Satoh, N., Shinzato, C.
    Genome and tissue-specific transcriptomes of the large-polyp coral, Fimbriaphyllia (Euphyllia) ancora: a recipe for a coral polyp.
    Commun Biol. 7(1):899. doi: 10.1038/s42003-024-06544-4. (2024)
  4. Yoshioka, Y., Yamashita, H., Uchida, T., Shinzato, C., Kawamitsu, M., Fourreau, C.J.L., Castelló, G.M., Fiedler, B.K., van den Eeckhout, T.M., Borghi, S., Reimer, J.D., Shoguchi, E.
    Azooxanthellate Palythoa (Cnidaria: Anthozoa) Genomes Reveal Toxin-related Gene Clusters and Loss of Neuronal Genes in Hexacorals
    Genome Biol Evol, 16(9):evae197. doi: 10.1093/gbe/evae197.(2024) PUBMED
  5. Kawamura, K. and Satoh, N.
    Embryonic development of the gastrodermis in the coral Acropora tenuis
    Zoological Science, 41(6) https://doi.org/10.2108/zs240032
  6. Yoshioka, Y., Nagata, F., Nonaka, M., Satoh, N.
    Molecular phylogenetic position of the family Fungiidae (Cnidaria: Anthozoa) based on complete mitochondrial genome sequences
    Galaxea, 26:43-7. (2024) https://doi.org/10.3755/galaxea.G26N-7
  7. Satoh, N. Sinniger, F., Narisoko, H., Nagahama, S., Okada, N., Shimizu, Y., Yoshioka, Y., Hisata, K., Harii, S.
    Using underwater mini-ROV for coral eDNA survey: a case study in Okinawan mesophotic ecosystems.
    Coral Reefs. LINK (2024)

 

Functional genomics

  1. Shoguchi, E., Kawachi, M., Shinzato, C. & Beedessee, G.
    Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies.
    Environmental Microbiology Reports, 16(2), e13238. Available from: https://doi.org/10.1111/1758-2229.13238 PUBMED

Genome Collaborative Research

  1. Kudo, K., Nishimura, T., Izumikawa, M., Kozone, I., Hashimoto, J., Fujie, M., Suenaga, H., Ikeda, H., Satoh, N., Shin-ya, K.
    Capability of a large bacterial artificial chromosome clone harboring multiple biosynthetic gene clusters for the production of diverse compounds.
    J Antibiot (2024). https://doi.org/10.1038/s41429-024-00711-9 PUBMED