Publications

Publications List (from 2017)

S. Cure, F. Pflug, S. Pigolotti, "Rate of epidemic spreading on complex networks", arXiv/2406.15449 (2024).
S. Pigolotti, S. Roldán-Vargas, "Inspection paradox and jump detection in glassy systems", arXiv/2407.19873 (2024).
R. J. H. Ross, G. D. Masucci, C. Yen Lin, T. L. Iglesias, S. Reiter, S. Pigolotti, "Growth generates a hyperdisordered pattern of chromatophores on squid skin", bioRxiv preprint (2024).
P. Zhou, R. S. Kasai, W. Fujita, T. A. Tsunoyama, H. Ueda, S. Pigolotti, T. K. Fujiwara, A. Kusumi, "Single-molecule detection of transient dimerization of opioid receptors 2: Heterodimer blockage reduces morphine tolerance", bioRxiv preprint (2024).
P. Zhou, T. A. Tsunoyama, R. S. Kasai, K. M. Hirosawa, Z. Kalay, A. Aladag, T. K. Fujiwara, S. Pigolotti, A. Kusumi, "Single-molecule detection of transient dimerization of opioid receptors 1: Homodimers’ effect on signaling and internalization", biorXiv preprint (2024).
T. Takahashi, H. Aoyanagi, S. Pigolotti, S. Toyabe, "Blocking uncertain errors of PCR", bioRxiv preprint (2024).
Q. Lu, S. Pigolotti, "Target search in the CRISPR/Cas9 system: Facilitated diffusion with target cues", New Journal of Physics 26, 043007 (2024).
É. Roldán, I. Neri, R. Chetrite, S. Gupta, S. Pigolotti, F. Jülicher, K. Sekimoto, "Martingales for physicists: A treatise on stochastic thermodynamics and beyond", arXiv:2210.09983, Advances in Physics 72(1–2), 1–258 (2024).
F. Pflug, D. Bhat, S. Pigolotti, "Genome replication in asynchronously growing microbial populations", arXiv:2308:12664, PLOS Computational Biology 20(1), e1011753 (2024).
S. Liang, S. Pigolotti, "Thermodynamic bounds on time-reversal asymmetry", arXiv:2308.14497, Phys. Rev. E (letter) 108, L062101 (2023).
D. Chiuchiù, S. Mondal, S. Pigolotti, "Pareto optimal front of kinetic proofreading", arXiv/2208.09381 , New Journal of Physics 25, 043007 (2023).
H. Aoyanagi, S. Pigolotti, S. Ono. S. Toyabe, "Error-suppression mechanism of PCR by blocker strands", bioRxiv preprint , Biophys. Jour. 122(7), 1334-1341 (2023).
P.V. Martín, A. Koldaeva, S. Pigolotti, "Coalescent dynamics of planktonic communities", Phys. Rev. E 106, 044408, arXiv/2204.04609, (2022).
D. Bhat, S. Hauf, C. Plessy, Y. Yokobayashi, S. Pigolotti, "Speed variations of bacterial replisomes", Elife11:e75884 (2022).
H. Tsai, D.W. Carlson, A. Koldaeva, S. Pigolotti, A.Q. Shen, "Optimization and Fabrication of Multi-Level Microchannels for Long-Term Imaging of Bacterial Growth and Expansion", Micromachines 13(4), 576 (2022).
A. Koldaeva, H. Tsai, A.Q. Shen, S. Pigolotti, "Population genetics in microchannels", Proc. Natl. Acad. Sci. 119 (12) e2120821119 (2022).
L. Peliti, S. Pigolotti, "Stochastic Thermodynamics: An Introduction". Princeton University Press, (2021)
Q. Lu, D. Bhat, D. Stepanenko, S. Pigolotti, "Search and localization dynamics of the CRISPR/Cas9 system", Phys. Rev. Lett. 127, 208102, arXiv/2103.10667 , Featured in Physics, (2021).
J.M. Miotto, S. Pigolotti, A.V. Chechkin, S. Roldán-Vargas, "Length scales in Brownian yet non-Gaussian dynamics", Phys. Rev. X 11, 031002 , arXiv/1991.07761, (2021).
S. Pigolotti, "Generalized Euler-Lotka equation for correlated cell divisions" , Phys. Rev. E (Letter) 103, L060402 (Editors' Suggestion), arXiv/2101.02403 (2021).
Y. Kinjo, N. Lo, P. V. Martín, G. Tokuda, S. Pigolotti, T. Bourguignon, "Enhanced Mutation Rate, Relaxed Selection, and the “Domino Effect” are associated with Gene Loss in Blattabacterium, A Cockroach Endosymbiont", Molecular Biology and Evolution, msab159, (2021).
X. Yang, M. Heinemann, J. Howard, G. Huber, S. Iyer-Biswas, G. Le Treut, M. Lynch, K. L. Montooth, D. J. Needleman, S. Pigolotti, J. Rodenfels, P. Ronceray, S. Shankar, I. Tavassoly, S. Thutupalli, D. V. Titov, J. Wang, and P. J. Foster, "Physical bioenergetics: Energy fluxes, budgets, and constraints in cells". Proc. Natl. Acad. Sci. (Perspective), 118 (26) (2021).
S. Pigolotti, D.Chiuchiù, P.V. Martín, D. Bhat, "Modeling the COVID-19 epidemic in Okinawa",

working manuscript

working manuscript

(2020).
S. Pigolotti, M.H. Jensen, Y. Zhan, G. Tiana, "Bifractal nature of chromosome contact maps", Physical Review Research 2, 043078 (2020).
P.V. Martín, Virginia Domínguez-García, Miguel A Muñoz, "Intermittent percolation and the scale-free distribution of vegetation clusters", New Journal of Physics Vol. 22 (2020).
P.V Martín, A. Bucek, T. Bourguignon, S. Pigolotti, "Ocean currents promote rare species diversity in protists", Science Advances 6(29), eaaz9037 (2020).
T. Bourguignon, Y. Kinjo, P. Villa-Martin, N.V. Coleman, Q. Tang, D.A. Arab, Z. Wang, G. Tokuda, Y. Hongoh, M. Ohkuma, S. Ho, S. Pigolotti, N. Lo, "Increased Mutation Rate is Linked to Genome Reduction in Prokaryotes", Current Biology D-20-00217 (2020).
J. Bechoefer, S. Ciliberto, S. Pigolotti, É. Roldán, "Stochastic Thermodynamics: Experiments and Theory" (editorial), J. Stat. Mech. 064001 (2020)
D.M. Busiello, S. Pigolotti, "Hyperaccurate currents in stochastic thermodynamics", Phys. Rev. E (Rapid Communication)100, 060102, arXiv/1908.00738 (2019).
D. Chiuchiù, J. Ferrare, S. Pigolotti, "Assembly of heteropolymers via a continuous reaction coordinate", Phys. Rev. E 100, 062502, arXiv:1905.05490 (2019).
D. Chiuchiù, Y. Tu, S. Pigolotti, "Error-speed correlations in biopolymer synthesis", Phys. Rev. Lett. 123, 038101, arXiv:1905.12869 (2019).
I. Neri, É. Roldán, S. Pigolotti, F. Jülicher, "Integral fluctuation relations for entropy production at stopping times", J. Stat. Mech. 104006J, arXiv:1903.08115 (2019).
P.V. Martín, M.A. Muñoz, S. Pigolotti, "Bet-hedging strategies in expanding populations", Plos. Comp. Biol. 15(4), e100652, BioRxiv preprint (2019).
A.C. Barato, É. Roldán, I.A. Martínez, S. Pigolotti, "Arcsine laws in stochastic thermodynamics", Phys. Rev. Lett. 121, 090601, arXiv/1712.00795 (2018).
N. Azaña Schednler-Meyer, S. Pigolotti, P. Mariani, "Evolution of complex asexual reproductive strategies in jellyfish", American Naturalist 192(1), 72-80 (2018).
D. Chiuchiù, S. Pigolotti, "Mapping of uncertainty relations between continuous and discrete time", Phys. Rev. E 97, 032110 , preprint arXiv:1711.00615 (2018).
M. Cencini, S. Pigolotti, "Energetic funnel facilitates facilitated diffusion", Nucleic Acid Research 46(2), 558-567 (2018).
S. Pigolotti, M. Cencini, D. Molina, M.A. Muñoz, "Stochastic spatial models in ecology: a statistical physics approach", J. Stat. Phys. 1-30, preprint arXiv:1708.03475 (2017).
S. Pigolotti, I. Neri, É. Roldán, F. Jülicher, "Generic Properties of Stochastic Entropy Production". Phys. Rev. Lett. 119, 140604 (2017).

Older publications: see the Google Scholar page.