A103 |
Stochastic Processes with Applications |
3 |
2 |
Simone Pigolotti |
Calculus, Fourier transforms, probability theory, scientific programming in Python.
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Students must install the Jupyter notebook
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A104 |
Vector and Tensor Calculus |
1 |
2 |
Eliot Fried |
Multivariate calculus and linear (or, alternatively, matrix) algebra
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Alternate years course, odd years alternates with A112
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A105 |
Nonlinear Waves: Theory and Simulation |
2 |
2 |
Emile Touber |
Mathematics for engineers and physicists
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A106 |
Computational Mechanics |
3 |
2 |
Marco Edoardo Rosti |
Partial differential equations.
Some knowledge of Python, MATLAB or other language is preferred.
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A107 |
Lie Algebras |
1 |
2 |
Liron Speyer |
Solid undergraduate linear algebra. Confident in following and constructing proofs. Some prior knowledge of the representation theory of finite groups is helpful but not completely necessary. Discuss this carefully with your academic mentor.
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Alternate years course: AY2024
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A108 |
Partial Differential Equations |
3 |
2 |
Qing Liu |
Single-variable and multi-variable calculus, Linear algebra, ordinary differential equations, real analysis, or equivalent knowledge.
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A110 |
Measure Theory and Integration |
1 |
2 |
Xiaodan Zhou |
B36 “Introduction to Real Analysis” is recommended but not required. The following is expected prerequisite knowledge: basic set theory, mathematical logic, the fundamental property of real numbers; familiarity with limit definitions, and how to use these definitions in rigorous proofs of sequences, continuity and differentiation of real-valued functions; properties of a supremum (or least upper bound) and infimum (or greatest lower bound); basic topology including the definitions of open, closed, compact sets in the Euclidean space; basic definitions and properties of Riemann integrals. Please contact the instructor at the beginning of the course with questions.
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Alternate years course: AY2025
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A111 |
Nonlinear Time Series Analysis and Manifold Learning |
3 |
2 |
Gerald Pao |
Python and/or R programming, linear algebra, B49 Dynamical systems
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Alternate years course: AY2025
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A112 |
Introduction to the Calculus of Variations |
2 |
2 |
Eliot Fried |
Students should have a robust understanding of undergraduate-level calculus, single and multivariable. Familiarity with differential equations would also be beneficial.
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Alternate years course, even years alternates with A104
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A113 |
Brain Computation |
3 |
2 |
Kenji Doya |
Programming in Python, e.g B50 Introduction to Scientific Computing. Basic knowledge in neuroscience, e.g. B52 Introduction to Neuroscience or A310 Computational Neuroscience, and statistical machine learning, e.g B46 Introduction to Machine Learning or B31 Statistical Tests, is preferred.
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NEW for AY2024
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A114 |
Functional Analysis |
1 |
2 |
Xiaodan Zhou |
Single-variable and multi-variable calculus, linear algebra, B36 Real Analysis, A110 Measure Theory, or equivalent.
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Different faculty teach this course each year
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A115 |
Partial Differential Equations II |
2 |
2 |
Ugur Abdulla |
A114 Functional Analysis and A108 Partial Differential Equations, or equivalent.
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A121 |
Nonlinear Time Series Analysis and Manifold Learning Laboratory |
1 |
2 |
Gerald Pao |
Required pass in first theoretical portion of this course, A111 Nonlinear Time series Analysis and Manifold Learning.
Prior deep knowledge of Taken’s theorem-based methods is an absolute prerequisite.
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Alternate years: AY2026
Follow-on course from A111 (required)
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A203 |
Advanced Optics |
2 |
2 |
Síle Nic Chormaic |
Quantum Mechanics
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Alternate years course: AY2024
Enrollment cap of 8 students
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A205 |
Quantum Field Theory |
3 |
2 |
Shinobu Hikami |
Quantum Mechanics and B11 Classical Electrodynamics
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Course retires AY2023
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A208 |
Bioorganic Chemistry |
2 |
2 |
Fujie Tanaka |
Undergraduate organic chemistry and/or biochemistry or related chemistry
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A209 |
Ultrafast Spectroscopy |
3 |
2 |
Keshav M. Dani |
B11 Classical Electrodynamics, A203 Advanced Optics
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Enrollment cap of 8 students
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A211 |
Advances in Atomic Physics |
2 |
2 |
Síle Nic Chormaic |
Quantum Mechanics
companion course to A203 Advanced Optics
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Alternate years course, AY2025
Enrollment cap of 8 students
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A213 |
Inorganic Electrochemistry |
1 |
2 |
Julia Khusnutdinova |
Undergraduate chemistry
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A214 |
Nucleic Acid Chemistry and Engineering |
2 |
2 |
Yohei Yokobayashi |
Assumes undergraduate organic chemistry or biochemistry.
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A218 |
Condensed Matter Physics |
2 |
2 |
Yejun Feng |
Basic quantum mechanics and basic concepts of statistics.
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A219 |
General Relativity |
1 |
2 |
Yasha Neiman |
Maxwell’s equations in differential form. Solving Maxwell’s equations to obtain electromagnetic waves. Linear algebra of vectors and matrices.
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Alternate years course, AY2025
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A220 |
New Enzymes by Directed Evolution |
2 |
2 |
Paola Laurino |
Undergraduate level biochemistry or molecular biology
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Enrollment cap of 8
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A221 |
Relativistic Mechanics and Classical Field Theory |
1 |
2 |
Yasha Neiman |
Maxwell’s equations in differential form. Solving Maxwell’s equations to obtain electromagnetic waves. Quantum mechanics.
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Alternate years course, AY2024
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A223 |
Quantum Materials Science |
3 |
2 |
Yoshinori Okada |
Undergraduate level of condensed matter physics
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A224 |
The Earth System |
3 |
2 |
Satoshi Mitarai |
Undergraduate ordinary and partial differential equations and/or A104 Vector and Tensor Calculus, or equivalent
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Course not offered AY2024-AY2026
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A225 |
Statistical Mechanics, Critical Phenomena and Renormalization Group |
2 |
2 |
Reiko Toriumi |
Classical Mechanics and Quantum Mechanics to advanced undergraduate level.
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A226 |
Synthetic Chemistry for Carbon Nanomaterials |
3 |
2 |
Akimitsu Narita |
Undergraduate-level knowledge of general chemistry; Advanced-level knowledge of organic chemistry.
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A227 |
Quantum Engineering – Simulation and Design |
3 |
2 |
Jason Twamley |
Undergraduate quantum mechanics (full year), especially quantum matrix mechanics for spin, Schrodinger equation (stationary and time dependent), and the operator treatment of the quantum harmonic oscillator.
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A228 |
Quantum Many-body Physics |
1 |
2 |
Philipp Höhn |
Quantum Mechanics and ideally Advanced Quantum Theory. A further background in Quantum Field Theory and Statistical Physics is helpful.
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A229 |
Statistical Fluctuations and Elements of Physical Kinetics |
2 |
2 |
Denis Konstantinov |
Statistical Physics (B12) or Statistical Mechanics, Critical Phenomena and Renormalization Group (A225); anything equivalent to a basic course on Nonrelativistic Quantum Mechanics.
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A230 |
Quantum Optics for Qubits |
3 |
2 |
Hiroki Takahashi |
Undergrad-level quantum mechanics and linear algebra
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A231 |
Quantum Information and Communication Theory |
2 |
2 |
David Elkouss |
Linear algebra, probability and statistics. Introductory knowledge of quantum information is helpful, although quantum bits, operations and measurements will be covered here.
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A232 |
Introduction to Quantum Cryptography |
2 |
2 |
David Elkouss |
Linear algebra, probability and statistics. The student will benefit from introductory knowledge on quantum information, though the exposition will include a short introduction to quantum bits, operations and measurements.
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NEW from AY2025, alternates with A231 Quantum Information
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A303 |
Developmental Biology |
2 |
2 |
Ichiro Masai |
Cell biology and/or genetics
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A304 |
Evolutionary Developmental Biology |
3 |
2 |
Noriyuki Satoh |
Cell biology and/or genetics
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A306 |
Neuroethology |
1 |
2 |
Yoko Yazaki-Sugiyama |
Neuroscience background required
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A308 |
Epigenetics |
3 |
2 |
Hidetoshi Saze |
Advanced undergraduate Cell Biology and Genetics
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A310 |
Computational Neuroscience |
2 |
2 |
Erik De Schutter |
Introductory neuroscience, computational methods, programming, mathematics.
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A312 |
Sensory Systems |
3 |
2 |
Izumi Fukunaga |
Background in neuroscience (either at the BSc/MSc level or the OIST basic neuroscience course). Cellular neurophysiology and neuroanatomy.
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A313 |
Cognitive Neurorobotics |
2 |
2 |
Jun Tani |
B46 Introduction to Machine Learning and programming experience in Python, C or C++ are required. Basic calculus of vectors and matrices and differential equations are assumed.
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A314 |
Neurobiology of Learning and Memory I |
1 |
2 |
Jeff Wickens |
Students should have previously taken at least two basic courses in neuroscience or have completed the equivalent by documented prior learning
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A315 |
Quantifying Naturalistic Animal Behavior |
3 |
2 |
Sam Reiter |
Introductory neuroscience and preparation in one or more areas of linear algebra, machine learning, or behavioral ecology is recommended.
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A316 |
Neuronal Molecular Signaling |
3 |
2 |
Marco Terenzio |
Basic knowledge of cellular biology and neurobiology.
Passing “Introduction to Neuroscience” or equivalent is required.
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A318 |
Neurobiology of Learning and Memory II |
2 |
2 |
Kazumasa Tanaka |
Basic knowledge of cellular biology and neurobiology. Passing “Introduction to Neuroscience” or equivalent is required.
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From AY2024, this course moves to term 2
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A319 |
Microbial Evolution and Cell Biology |
1 |
2 |
Filip Husnik |
Basic understanding of evolutionary and cell biology at the undergraduate level is assumed. e.g., B27 Molecular Biology of the Cell or B23 Molecular Evolution
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A320 |
The Cell Cycle and Human Diseases |
2 |
2 |
Franz Meitinger |
Molecular Biology and Genetics required, e.g.: B27 Molecular Biology of the Cell and B35 Genetics and Modern Genetic Technologies
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A321 |
Macroevolution |
2 |
2 |
Lauren Sallan |
Undergraduate biology, especially evolution. Course B23 Molecular Evolution is required. Contact Prof Sallan if you seek an exemption.
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A323 |
Cognitive Neural Dynamics |
2 |
1 |
Tomoki Fukai |
Students are encouraged to have basic knowledge of statistical physics, stochastic dynamics, and machine learning. Basic skills in mathematics, programming, and computer simulations are required.
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NEW for AY2024
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A324 |
Paleontology and the Diversity of Life |
2 |
2 |
Lauren Sallan |
Basic knowledge of and interest in biology or evolution required, undergraduate biology coursework preferred.
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NEW from AY2025, alternates with A321 Macroevolution
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A337 |
Introduction to Embodied Cognitive Science |
2 |
2 |
Tom Froese |
For this course, a basis in cognitive science (any discipline) is highly advantageous. Due to the highly interactive and group-based nature of the course, the number of students is limited to 9 and preference will be given to students with a background in one of the disciplines that form the cognitive sciences. Please consult with Prof Froese before enrolling.
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Limit of 9 enrollments
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A409 |
Electron Microscopy |
3 |
2 |
Matthias Wolf |
Undergraduate mathematics.
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B08 |
Physics for Life Sciences |
2 |
2 |
Bernd Kuhn |
|
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B10 |
Analytical Mechanics |
1 |
2 |
Mahesh Bandi |
College level introductory physics or permission of instructor, mathematics for physics.
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B11 |
Classical Electrodynamics |
2 |
2 |
Tsumoru Shintake |
Undergraduate mechanics and a firm grasp of calculus and vector mathematics
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B12 |
Statistical Physics |
1 |
2 |
Nic Shannon |
Undergraduate calculus and algebra.
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B13 |
Theoretical and Applied Fluid Mechanics |
2 |
2 |
Pinaki Chakraborty |
B10 Analytical Mechanics and/or A104 Vector and Tensor Calculus.
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B14 |
Theoretical and Applied Solid Mechanics |
3 |
2 |
Gustavo Gioia |
B10 Analytical Mechanics and/or A104 Vector and Tensor Calculus.
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B20 |
Introductory Evolutionary Developmental Biology |
2 |
2 |
Hiroshi Watanabe |
No prior knowledge assumed
|
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B21 |
Biophysics of Cellular Membranes |
3 |
2 |
Akihiro Kusumi |
Biology, chemistry, and/or physics at undergraduate levels
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B23 |
Molecular Evolution |
1 |
2 |
Tom Bourguignon |
Assumes general knowledge in biology
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B24 |
Neuromotor Systems |
1 |
2 |
Marylka Yoe Uusisaari |
This is a basic level course, that will be adjusted accordingly to the interests of enrolled students. No prior knowledge assumed.
|
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B27 |
Molecular Biology of the Cell |
1 |
2 |
Keiko Kono |
The course is very basic. Non-biology students are welcome.
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B29 |
Linear Algebra |
2 |
2 |
Liron Speyer |
Familiarity with real and complex numbers will be assumed. Ideally, students will have had some previous exposure to mathematical proofs, though this is not strictly required.
|
Alternate years course, AY2025
|
B31 |
Statistical Tests |
2 |
1 |
Tomoki Fukai |
Basic knowledge of elementary mathematics such as differentiation, integration, and elementary linear algebra. However, whenever necessary, mathematical details will be explained.
Students will need to write some code in Python
|
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B33 |
Organic Photonics and Electronics |
3 |
2 |
Ryota Kabe |
Undergraduate chemistry
|
|
B34 |
Coral Reef Ecology and Biology |
3 |
2 |
Timothy Ravasi |
|
|
B35 |
Genetics and Modern Genetic Technologies |
1 |
2 |
Tomomi Kiyomitsu |
|
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B36 |
Introduction to Real Analysis |
1 |
2 |
Xiaodan Zhou |
Undergraduate Calculus or equivalent is required. Multivariable calculus is not a prerequisite. If you are not sure about the prerequisite material, please contact the instructor before enrolling.
|
Alternate years course, AY2024
|
B37 |
Introduction to embodied cognitive science |
2 |
2 |
Tom Froese |
A basis in cognitive science (any discipline) is preferred. Please consult with Prof Froese before enrolling.
|
Enrollment cap of 9
|
B38 |
Human Subjects Research: A Primer |
1 |
2 |
Gail Tripp |
There are no prerequisites for this course. Students will be expected to complete assigned readings ahead of class in order to participate fully.
|
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B40 |
Introduction to Polymer Science |
1 |
2 |
Christine Luscombe |
|
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B41 |
Fundamentals of Ecology |
1 |
2 |
David Armitage |
Undergraduate-level coursework in general biology and calculus are recommended but not required.
|
|
B42 |
The Diversity of Fish |
1 |
2 |
Vincent Laudet |
Curiosity and sense of wonder
|
|
B44 |
Stellar Physics |
1 |
2 |
Shigehiro Nagataki |
Fundamental undergraduate-level physics recommended but not required.
|
Course not offered AY2024
|
B46 |
Introduction to Machine Learning |
1 |
2 |
Makoto Yamada |
No prerequisites. However, without some mathematics and programming background, topics like deep learning are hard to follow.
|
|
B48 |
Introduction to Complexity Science |
2 |
2 |
Ulf Dieckmann |
Basics of calculus, linear algebra, and programming.
|
|
B49 |
Dynamical Systems |
2 |
2 |
Mahesh Bandi |
Classical mechanics, e.g. B10
|
Alternate years course, AY2023
|
B50 |
Introduction to Scientific Computing |
1 |
2 |
Kenji Doya |
Basic skills of computer use.
Familiarity with linear algebra and basic differential equations is assumed, but the course aims to help intuitive understanding of such mathematical concepts by computing and visualization.
|
NEW for AY2024
|
B51 |
An introduction to Quantum Mechanics, Quantum Optics and Quantum Science |
1 |
2 |
Bill Munro |
undergraduate quantum mechanics and linear algebra
|
NEW for AY2024
|
B52 |
Introductory Neuroscience |
1 |
2 |
Yukiko Goda |
Undergraduate biochemistry, biology, and chemistry
|
NEW for AY2024
|
B53 |
Introduction to Applied Cryptography |
2 |
1 |
Carlos Cid |
No prerequisite within the OIST graduate syllabus. The expectation is that students have a scientific background, with knowledge equivalent to first-year undergraduate mathematics, or more generally, the equivalent to discrete mathematics taught in many science undergraduate degrees.
|
Five-week intensive course
|