Shoguchi, E., Shinzato, C., Kawashima, T., Gyoja, F., Mungpakdee, S., Koyanagi, R., Takeuchi, T., Hisata, K., Tanaka, M., Fujiwara, M., Hamada, M., Azadeh, S., Fujie, M., Usami, T., Goto, H., Yamasaki, S., Arakaki, N., Suzuki, Y., Sugano, S., Toyoda, A., Kuroki, Y., Fujiyama, A., Medina, M., Coffroth, M. A., Bhattacharya, D., and Satoh, N. Draft assembly of the Symbiodinium minutum nuclear genome reveals dinoflagellate gene structure.
Current Biology 23, 1399-1408. (2013) PUBMED
Husnik, F., Nikoh, N., Koga, R., Ross, L., Duncan, R. P., Fujie, M., Tanaka, M., Satoh, N., Bachtrog, D., Wilson, A. C. C., Dohlen, C. D., Fukatsu, T., and McCutcheon, J. P. Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis.
Cell 153, 1567–1578. (2013) PUBMED
Shoguchi, E., Tanaka, M., Shinzato, C., Kawashima, T., Satoh, N. A genome-wide survey of photoreceptor and circadian genes in the coral, Acropora digitifera.
Gene 515: 426–431. (2013) PUBMED
Hamada, M., Shoguchi, E., Shinzato, C., Kawashima, T., Miller, D. J., Satoh, N. The complex NOD-like receptor repertoire of the coral Acropora digitifera includes novel domain combinations.
Mol Biol Evol. 30(1):167-76. (2013) PUBMED
Ikuta, T., Chen, Y.C., Annunziata, R., Ting, H.C., Tung, C., Koyanagi, R., Tagawa, K., Humphreys, T., Fujiyama, A., Saiga, H., Satoh, N., Yu, J. K., Arnone, M.I., Su, Y.H. Identification of an intact ParaHox cluster with temporal colinearity but altered spatial colinearity in the hemichordate Ptychodera flava.
BMC Evolutionary Biology 13:129. (2013)LINKPUBMED
Kobayashi, K., Yamada, L., Satou, Y., Satoh, N. Differential gene expression in notochord and nerve cord fate segregation in the Ciona intestinalis embryo.
Genesis 51:647–659. (2013) PUBMED
Matsumae ,H., Hamada, M., Fujie, M., Niimura, Y., Tanaka, H., Kawashima, T. A methodical microarray design enables surveying of expression of a broader range of genes in Ciona intestinalis.
Gene 519: 82-90. (2013) PUBMED
Takeuchi, T., Kawashima, T., Koyanagi, R., Satoh, N. The genome of the Japanese pearl oyster, Pinctada fucata.
In "Recent Advances in Pearl Research".Eds. S. Watabe, K. Maeyama, H. Nagasawa, TERRAPUB, Tokyo (2013)
Kawashima, T., Takeuchi, T., Koyanagi, R., Kinoshita, S., Endo, H., Endo, K. Initiating the Mollusk Genomics Annotation Community: Toward Creating the Complete Curated Gene-Set of the Japanese Pearl Oyster, Pinctada fucata
Zoological Science 30: 794–796. (2013) LINK
Koyanagi, R., Takeuchi, T., Hisata, K., Gyoja, F., Satoh, N., Kawashima, T. MarinegenomicsDB: An integrated genome viewer for community-based annotation of genomes.
Zoological Science 30: 797–800. (2013)LINKPUBMED
Miyamoto, H., Endo, H., Hashimoto, N., Iimura, K., Isowa, Y., Kinoshita, S., Kotaki, R., Masaoka, T., Miki, T., Nakayama, S., Nogawa, C., Notozawa, A., Ohmori, F., Sarashina, I., Suzuki, M., Takagi, R., Takahashi, J., Takeuchi, T., Yokoo, N., Satoh, N., Toyohara, H., Miyashita, T., Wada, H., Samata, T., Endo, K., Nagasawa, H., Asakawa, S., Watabe, S. The diversity of shell matrix proteins: genome-wide investigation of the pearl oyster Pinctada fucata.
Zoological Science 30: 801–816. (2013)LINKPUBMED
Morino, Y., Okada, K., Niikura, M., Honda, M., Satoh, N., Wada, H., A genome-wide survey of genes encoding transcription factors in the Japanese pearl oyster, Pinctada fucata: I. Homeobox genes.
Zoological Science 30: 851–857. (2013)LINKPUBMED
Matsumoto, T., Masaoka, T., Fujiwara, Y., Nakamura, Y., Kinoshita, S., Satoh, N., Awaji, M. Reproduction-related genes in the pearl oyster genome.
Zoological Science 30: 826–850. (2013)LINKPUBMED
Koga, H., Hashimoto, N., G. Suzuki, D., Ono, H., Yoshimura, M., Suguro, T., Yonehara, Y., Abe, T., Satoh, N., Wada, H. A genome-wide survey of genes encoding transcription factors in Japanese pearl oyster Pinctada fucata II. Tbx, Fox, Ets, HMG, NFκB, bZIP and C2H2 Zinc fingers.
Zoological Science 30: 858–867. (2013)LINKPUBMED
Gyoja, F., Satoh, N. Evolutionary aspects of variability in bHLH orthologous families: insights from the pearl oyster Pinctada fucata.
Zoological Science 30: 868–876. (2013)LINKPUBMED
Shoguchi, E., Tanaka, M., Takeuchi, T., Shinzato, C., Satoh, N. Probing a coral genome for components of the photo-protective scytonemin biosynthetic pathway and the 2-aminoethylphosphonate pathway.
Marine Drugs, 11(2):559-70. (2013) PUBMED
Sota, T., Konuma, J., Fujiwara, M., Shoguchi, E. Genome sizes of three species in the subtribe Carabina (Coleoptera: Carabidae)
Entomological Science 16: 122-124. (2013) LINK
Satoh, N. Ciona: a Model for Developmental Genomics
Encyclopedia of Life Sciences on line. (2013)LINK
Kondo, M.,Maeda, K., Hirashima, K., Tachihara, K. Comparative larval development of three amphidromous Rhinogobius species making reference to their habitat preferences and migration biology.
Marine & Freshwater Research 64:249-466. (2013)LINK
Maeda K., Tan H.H. Review of Stiphodon (Gobiidae: Sicydiinae) from western Sumatra, with description of a new species.
Raffles Bulletin of Zoology 62:749-761. (2013) LINK
Nishi,S., Tsubouchi, T., Takaki, Y., Koyanagi, R., Satoh, N., Maruyama, T., Hatada, Y. Draft genome sequence of Loktanella cinnabarina LL-001T, isolated from deep-sea floor sediment.
Genome Announcements, 1(6) doi: 10.1128/genomeA.00927-13. (2013) PUBMED
Maeda, K., Saeki, T. First record of a sicydiine goby, Stiphodon multisquamus (Actinopterygii: Gobioidei: Gobiidae), from Okinawa Island, Japan.
Species Diversity 18:215–221. (2013) LINK
Zhang QJ, Luo YJ, Wu HR, Chen YT, Yu JK. Expression of germline markers in three species of amphioxus supports a preformation mechanism of germ cell development in cephalochordates.
EvoDevo 4, 17, doi:10.1186/2041-9139-4-17 (2013).
